Teaching Material

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== Cool Videos we made for teaching and information ==
 
== Cool Videos we made for teaching and information ==
 
[http://vimeo.com/user795818/videos/sort:oldest Videos at Vimeo (in HD)]
 
[http://vimeo.com/user795818/videos/sort:oldest Videos at Vimeo (in HD)]
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These show Abbe's diffraction experiments (Peter Evennett), cool SPIM 3D reconstructions, and the effects of the confocal pinhole etc.
  
 
== Light Microscopy ==
 
== Light Microscopy ==
=== IFN Microscopy Course ===
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=== BioDIP Microscopy Course ===
 
* [[media:Microscopy_principles_guide.pdf|Basics of Microscopy (2008)]]
 
* [[media:Microscopy_principles_guide.pdf|Basics of Microscopy (2008)]]
 
* [[media:Ibarra_how-to-set-koehler-illumination.pdf|Köhler Illumination (2008)]]
 
* [[media:Ibarra_how-to-set-koehler-illumination.pdf|Köhler Illumination (2008)]]
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* [[media:Confocal_notes.pdf|Confocal Microscopy]]
 
* [[media:Confocal_notes.pdf|Confocal Microscopy]]
 
* [[media:Optical_Sectioning_ProsAndCons10-2009.pdf|Optical Sectioning Methods - pros and cons (LMF)]]
 
* [[media:Optical_Sectioning_ProsAndCons10-2009.pdf|Optical Sectioning Methods - pros and cons (LMF)]]
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* [[media:DeconvolutionAndOpticalSectioning-prosandcons-11-2010.pdf|Deconvolution and Optical Sectioning - pros and cons-11-2010‎]]
 
* [[media:QuantitativeImagingPhDCourseFriday-10-2009.pdf| Quantitative Imaging and Image Processing/Analysis 10-2009 (IPF)]]
 
* [[media:QuantitativeImagingPhDCourseFriday-10-2009.pdf| Quantitative Imaging and Image Processing/Analysis 10-2009 (IPF)]]
  
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=== Companies' Resources ===
 
=== Companies' Resources ===
* [http://www.zeiss3d.de/C1256B5E0051569F/EmbedTitelIntern/Microscopy_from_the_very_beginning/$File/Microscopy_from_the_very_beginning.pdf Zeiss: Microscopy from the very Beginning]
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* [http://zeiss-campus.magnet.fsu.edu/index.html Zeiss Campus - Education in Microscopy and Digital Imaging - with flash tutorials]
* [ftp://ftp.soft-imaging.de/brochures/pdf/EM/Basics_of_Light_microscopy.pdf Olympus: Basics of Light Microscopy]
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* [http://www.olympusmicro.com/index.html Olympus Microscopy Resources]
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* [http://www.microscopyu.com/tutorials/java/ Nikon's interactive Java tutorials and demonstrations for many light microscopy techniques]
 
* [[media:OpticalFilters_EssentialTools_08-12-09.pdf| Optical Filters - Essential Tools by Dr. Michael Sommerauer (AHF)]]
 
* [[media:OpticalFilters_EssentialTools_08-12-09.pdf| Optical Filters - Essential Tools by Dr. Michael Sommerauer (AHF)]]
 
* [[media:OpticalFilters_SpecifyingFilters_08-12-09.pdf| Optical Filters - Specifying Filters by Dr. Michael Sommerauer (AHF)]]
 
* [[media:OpticalFilters_SpecifyingFilters_08-12-09.pdf| Optical Filters - Specifying Filters by Dr. Michael Sommerauer (AHF)]]
* [http://www.microscopyu.com/tutorials/java/ Nikon's interactive Java tutorials and demonstrations for many light microscopy techniques]
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=== Other Resources ===
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* [http://micro.magnet.fsu.edu/primer/ Optical Microscopy Primer]
 
=== Related Sections ===
 
=== Related Sections ===
 
* [[Papers#Light_Microscopy|Papers]]
 
* [[Papers#Light_Microscopy|Papers]]
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== Image Processing ==
 
== Image Processing ==
 
=== IPF Image Processing Courses ===
 
=== IPF Image Processing Courses ===
* [[media:2010-07-Basics_of_Imaging_Processing_Course-final2.pdf‎|What you need to know about Image Analysis - July 2010]]
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* [[media:2011-10-Basics_of_Imaging_Processing_Course.pdf|What you need to know about Image Analysis - updated Oct 2011]]
* [[media:QuantitativeColocAnalysis0709small.pdf|Quantitative Imaging for Colocalization Analysis (updated for july 2009)]]
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* [[media:QuantitativeColocAnalysis-10-2011.pdf‎|Quantitative Imaging for Colocalization Analysis (updated Oct 2011)]]
* [http://pacific.mpi-cbg.de/wiki/index.php/Category:Tutorials Fiji (is just ImageJ - batteries included) Tutorials]
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* [[media:Intro-fiji-and-macros.pdf‎|Introduction to Fiji and Macro Programming (updated Jul 2011)]]
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* [http://fiji.sc/Category:Tutorials Fiji (is just ImageJ - batteries included) Tutorials]
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===General Image Processing reading material===
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*[http://swehsc.pharmacy.arizona.edu/exppath/micro/digimage_ethics.php Image manipulation ethics - Tutorial - avoid twisted pixels], and the [http://www.springerlink.com/content/00311qw26613m261/fulltext.pdf original article]
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==High Content Screening==
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===DIPP course from the TDS of the MPI-CBG===
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* [[media:Presentations_TDD_DIPP2011.zip|Presentations about multifactorial experimental design, automated microscopy and image analysis - updated Oct 2011]]
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* [[media:Presentations_DIPP-course-TDS_2012_03.zip|Presentations about multifactorial experimental design, automated microscopy and image analysis - updated Mar 2012]]
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== Other courses ==
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=== Matlab ===
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* [[media:Matlab-Fundamentals.pdf|Matlab Fundamentals - December 2010]]
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See also the handouts of the [http://www.lmc.ethz.ch/Teaching/matlab_course Matlab for biologists] course at the Light Microscopy Centre of the ETH Zürich and the [http://www.neural-circuits.org/teaching/programming-with-matlab materials] of the Matlab programming course for Biophysicists at Universidad Autónoma de Madrid.
  
 
== Course schedules ==
 
== Course schedules ==
  
* [[Peter_Evennett%27s_Course_Oct_09|Peter E course schedule 2009 oct]]
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* [[BasicCoursePhDProg - Basics in Light Microscopy - schedule April 2019]]
  
* [[PhD_Course_Nov_09|PhD course schedule 2009 nov]]
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* [[BasicCoursePhDProg - Basics in Light Microscopy - schedule April 2018]]
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* [[BasicCoursePhDProg - Peter Evennett - schedule September 2017]]
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* [[BasicCoursePhDProg - Peter Evennett - schedule December 2016]]
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* [[BasicCoursePhDProg - Peter Evennett - schedule April 2016]]
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* [[BasicCoursePhDProg - Peter Evennett - schedule March 2015]]
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* [[BasicCoursePhDProg - Peter Evennett - schedule October 2014]]
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* [[BasicsCoursePhDprog-PeterEvennett - schedule March 2014]]
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* [[BasicsCoursePhDprog-PeterEvennett - schedule Oct. 2013]]
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* [[BasicsCoursePhDprog-PeterEvennetApril2013]]
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* [[BasicsCoursePhDprog-PeterEvennetOctober2012]]
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* [[BasicsCoursePhDprog-PeterEvennetApril2012]]
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* [[BasicsCoursePhDprog-PeterEvennetOct2011-observed timing and needed materials]]
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* [[BasicsCoursePhDprog-PeterEvennetMay2011-observed_timing]]
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* [[BasicsCoursePhDprog-PeterEvennetMay2011]]
  
 
* [[PeterEvennettCourse04-2010|Peter Evennett PhD course schedule Apr 2010]]
 
* [[PeterEvennettCourse04-2010|Peter Evennett PhD course schedule Apr 2010]]
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* [[PhD_Course_Nov_09|PhD course schedule 2009 nov]]
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* [[Peter_Evennett%27s_Course_Oct_09|Peter E course schedule 2009 oct]]

Revision as of 09:54, 1 November 2018

Contents

Cool Videos we made for teaching and information

Videos at Vimeo (in HD) These show Abbe's diffraction experiments (Peter Evennett), cool SPIM 3D reconstructions, and the effects of the confocal pinhole etc.

Light Microscopy

BioDIP Microscopy Course

add-on

Peter Evennett Microscopy Course

add-on

Companies' Resources

Other Resources

Related Sections

Image Processing

IPF Image Processing Courses

General Image Processing reading material

High Content Screening

DIPP course from the TDS of the MPI-CBG

Other courses

Matlab

See also the handouts of the Matlab for biologists course at the Light Microscopy Centre of the ETH Zürich and the materials of the Matlab programming course for Biophysicists at Universidad Autónoma de Madrid.

Course schedules

Personal tools