Links
From BioDIP
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** [http://www.macbiophotonics.ca McMaster Biophotonics Facility]<br>useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual | ** [http://www.macbiophotonics.ca McMaster Biophotonics Facility]<br>useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual | ||
** [http://www.loci.wisc.edu/ome/formats.html LOCI Bio-Formats Library]<br>plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems | ** [http://www.loci.wisc.edu/ome/formats.html LOCI Bio-Formats Library]<br>plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems | ||
− | ** [http://en.wikipedia.org/wiki/Imagej ImageJ @ Wikipedia] | + | ** [http://en.wikipedia.org/wiki/Imagej ImageJ @ Wikipedia]<br>further informations |
* [http://www.improvision.com/products/volocity/volocity_le Improvision Volocity LE]<br>easy-to-use image viewer for various microscopy file formats, including confocal ones<br>(Windows, Mac OS-X) | * [http://www.improvision.com/products/volocity/volocity_le Improvision Volocity LE]<br>easy-to-use image viewer for various microscopy file formats, including confocal ones<br>(Windows, Mac OS-X) |
Revision as of 16:01, 3 June 2008
Contents |
Confocal Infos and Introductions
- Molecular Expression Primer
very comprehensive - provides information about various microscopy techniques, stainings and much more
- Jim Pawley Course Material
pre-course reading chapters foo Jim Pawley's "3D Microscopy of Living Cells" course
- Nyquist Calculator
calculate the - according to Harry Nyquist - perfect sampling for your setup
Spectral Data
- Fluorescent Spectra Database by Carl Boswell, George McNamara
comprehensive database with sorted spectras and lasers, lamps and filter sets
- BIO-RAD Microsciences fluorochrome database
fluorochrome spectra database, search function, Java based
- Invitrogen Fluorescence Spectra Viewer
nice layout, no search function, Java based
- BD Biosciences Fluorescence Spectrum Viewer
slightly different fluorochrome setup, i.e. some FACS dyes
- Online Spectra Viewer
a lot of dyes, filters and lasers available, rather simple layout
Free Image Processing Software
- ImageJ
advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)- McMaster Biophotonics Facility
useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual - LOCI Bio-Formats Library
plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems - ImageJ @ Wikipedia
further informations
- McMaster Biophotonics Facility
- Improvision Volocity LE
easy-to-use image viewer for various microscopy file formats, including confocal ones
(Windows, Mac OS-X)
- BioImageXD
open-source image analysis software
(Beta, cross platform)
- Zeiss ZEN LE
new free Zeiss software for viewing and processing *.lsm images
(Windows XP 32bit only)
- Zeiss LSM Image Browser
traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information
(Windows only)
- Leica LAS AF Lite
free Leica software, can open *.lif and *.lei files, acquisition information are accessible
(Windows XP 32bit only)
- Olympus FV Viewer
free Olympus software, can open *.oib and *.oif files from Fluoview Confocals
(Windows XP 32bit only)
- Zeiss Axiovision LE
free version of the Axiovision software, able to open *.lsm files as well, nice batch export
(Windows only)
- IrfanView
image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only)
Mailing Listserver
- Confocal List Server
Confocal Microscopy List, many subscribers and discussions, archive function
- ImageJ Mailing List
lots of discussions, good if you are interested in using ImageJ more advanced