Fiji

ImageJ: colocalization analysis with automated threshold

Microscopy-related features

ImageJ core already supports a couple of microscopy-specific file formats such as Zeiss lsm. Far more support can be added by installing Bio-Formats.

Manuals

See ImageJ section for manuals.

Links

• website
• McMaster Biophotonics Facility - plug-in bundle, ImageJ Manual
• Biomedical Imaging Group of EPFL - advanced plugins
• ImageJ @ Wikipedia