Links
From BioDIP
(Difference between revisions)
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== Free Image Processing Software == | == Free Image Processing Software == | ||
| − | * ImageJ<br>advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform) | + | * ImageJ<br>advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)<br>McMaster Biophotonics Facility - Downloads<br>useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual<br>LOCI Bio-Formats Library<br>plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems<br>LSM Toolbox<br>plug-in for ImageJ especially for *.lsm files |
| − | McMaster Biophotonics Facility - Downloads | + | |
| − | useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual | + | |
| − | LOCI Bio-Formats Library | + | |
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| − | + | * Improvision Volocity LE<br>easy-to-use image viewer for various microscopy file formats, including confocal ones<br>(Windows, Mac OS-X) | |
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| − | + | * BioImageXD<br>open-source image analysis software<br>(Beta, cross platform) | |
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| − | + | * Zeiss ZEN LE<br>new free Zeiss software for viewing and processing *.lsm images<br>(Windows XP 32bit only) | |
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| − | + | * Zeiss LSM Image Browser<br>traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information<br>(Windows only) | |
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| − | + | ||
| − | + | * Leica LAS AF Lite<br>free Leica software, can open *.lif and *.lei files, acquisition information are accessible<br>(Windows XP 32bit only) | |
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| − | + | * Olympus FV Viewer<br>free Olympus software, can open *.oib and *.oif files from Fluoview Confocals<br>(Windows XP 32bit only) | |
| − | + | ||
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| − | + | * Zeiss Axiovision LE<br>free version of the Axiovision software, able to open *.lsm files as well, nice batch export<br>(Windows only) | |
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| − | + | * IrfanView<br>image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only) | |
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| − | Mailing Listserver | + | <br> |
| + | == Mailing Listserver == | ||
| − | + | * CONFOCAL@LISTSERV.BUFFALO.EDU<br>Confocal Microscopy List, many subscribers and discussions, archive function<br> | |
| − | + | ||
| − | + | * ImageJ Mailing List<br>lots of discussions – good if you are interested in using ImageJ more advanced | |
| − | + | ||
Revision as of 16:39, 2 June 2008
Contents |
Confocal Infos and Introductions
- Molecular Expression Primer
very comprehensive - provides information about various microscopy techniques, stainings and much more
- Jim Pawley Course Material
pre-course reading chapters foo Jim Pawley's "3D Microscopy of Living Cells" course
- Nyquist Calculator
calculate the - according to Harry Nyquist - perfect sampling for your setup
Spectral Data
- Fluorescent Spectra Database by Carl Boswell, George McNamara
comprehensive database with sorted spectras and lasers, lamps and filter sets
- BIO-RAD Microsciences fluorochrome database
fluorochrome spectra database, search function, Java based
- Invitrogen Fluorescence Spectra Viewer
nice layout, no search function, Java based
- BD Biosciences Fluorescence Spectrum Viewer
slightly different fluorochrome setup, i.e. some FACS dyes
- Online Spectra Viewer
a lot of dyes, filters and lasers available, rather simple layout
Free Image Processing Software
- ImageJ
advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)
McMaster Biophotonics Facility - Downloads
useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual
LOCI Bio-Formats Library
plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems
LSM Toolbox
plug-in for ImageJ especially for *.lsm files
- Improvision Volocity LE
easy-to-use image viewer for various microscopy file formats, including confocal ones
(Windows, Mac OS-X)
- BioImageXD
open-source image analysis software
(Beta, cross platform)
- Zeiss ZEN LE
new free Zeiss software for viewing and processing *.lsm images
(Windows XP 32bit only)
- Zeiss LSM Image Browser
traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information
(Windows only)
- Leica LAS AF Lite
free Leica software, can open *.lif and *.lei files, acquisition information are accessible
(Windows XP 32bit only)
- Olympus FV Viewer
free Olympus software, can open *.oib and *.oif files from Fluoview Confocals
(Windows XP 32bit only)
- Zeiss Axiovision LE
free version of the Axiovision software, able to open *.lsm files as well, nice batch export
(Windows only)
- IrfanView
image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only)
Mailing Listserver
- CONFOCAL@LISTSERV.BUFFALO.EDU
Confocal Microscopy List, many subscribers and discussions, archive function
- ImageJ Mailing List
lots of discussions – good if you are interested in using ImageJ more advanced
