Links
From BioDIP
(Difference between revisions)
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== Free Image Processing Software == | == Free Image Processing Software == | ||
− | * ImageJ<br>advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)<br>McMaster Biophotonics Facility | + | * [http://rsb.info.nih.gov/ij ImageJ]<br>advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)<br>[http://www.macbiophotonics.ca/downloads.htm McMaster Biophotonics Facility]<br>useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual<br>[http://www.loci.wisc.edu/ome/formats.html LOCI Bio-Formats Library]<br>plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems<br>[http://imagejdocu.tudor.lu/Members/ppirrotte/lsmtoolbox LSM Toolbox]<br>plug-in for ImageJ especially for *.lsm files |
− | * Improvision Volocity LE<br>easy-to-use image viewer for various microscopy file formats, including confocal ones<br>(Windows, Mac OS-X) | + | * [http://www.improvision.com/products/volocity/volocity_le Improvision Volocity LE]<br>easy-to-use image viewer for various microscopy file formats, including confocal ones<br>(Windows, Mac OS-X) |
− | * BioImageXD<br>open-source image analysis software<br>(Beta, cross platform) | + | * [http://modeling.bio.jyu.fi:8080/bioimagexd BioImageXD]<br>open-source image analysis software<br>(Beta, cross platform) |
− | * Zeiss ZEN LE<br>new free Zeiss software for viewing and processing *.lsm images<br>(Windows XP 32bit only) | + | * [http://www.zeiss.de/C12567BE0045ACF1/Contents-Frame/72E7F802F859568FC125734C0039B812 Zeiss ZEN LE]<br>new free Zeiss software for viewing and processing *.lsm images<br>(Windows XP 32bit only) |
− | * Zeiss LSM Image Browser<br>traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information<br>(Windows only) | + | * [http://www.zeiss.de/C12567BE00472A5C/EmbedTitelIntern/LSMImageBrowser/$File/INST_IB.EXE Zeiss LSM Image Browser]<br>traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information<br>(Windows only) |
− | * Leica LAS AF Lite<br>free Leica software, can open *.lif and *.lei files, acquisition information are accessible<br>(Windows XP 32bit only) | + | * [ftp://ftp.llt.de/softlib/LAS_AF_Lite/ Leica LAS AF Lite]<br>free Leica software, can open *.lif and *.lei files, acquisition information are accessible<br>(Windows XP 32bit only) |
− | * Olympus FV Viewer<br>free Olympus software, can open *.oib and *.oif files from Fluoview Confocals<br>(Windows XP 32bit only) | + | * [http://downloads.olympus-europa.com/microscopy/software/FV_Viewer.exe Olympus FV Viewer]<br>free Olympus software, can open *.oib and *.oif files from Fluoview Confocals<br>(Windows XP 32bit only) |
− | * Zeiss Axiovision LE<br>free version of the Axiovision software, able to open *.lsm files as well, nice batch export<br>(Windows only) | + | * [http://www.zeiss.de/c12567be0045acf1/Contents-Frame/cbe917247da02a1cc1256e0000491172 Zeiss Axiovision LE]<br>free version of the Axiovision software, able to open *.lsm files as well, nice batch export<br>(Windows only) |
− | * IrfanView<br>image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only) | + | * [http://www.irfanview.com/ IrfanView]<br>image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only) |
<br> | <br> |
Revision as of 16:43, 2 June 2008
Contents |
Confocal Infos and Introductions
- Molecular Expression Primer
very comprehensive - provides information about various microscopy techniques, stainings and much more
- Jim Pawley Course Material
pre-course reading chapters foo Jim Pawley's "3D Microscopy of Living Cells" course
- Nyquist Calculator
calculate the - according to Harry Nyquist - perfect sampling for your setup
Spectral Data
- Fluorescent Spectra Database by Carl Boswell, George McNamara
comprehensive database with sorted spectras and lasers, lamps and filter sets
- BIO-RAD Microsciences fluorochrome database
fluorochrome spectra database, search function, Java based
- Invitrogen Fluorescence Spectra Viewer
nice layout, no search function, Java based
- BD Biosciences Fluorescence Spectrum Viewer
slightly different fluorochrome setup, i.e. some FACS dyes
- Online Spectra Viewer
a lot of dyes, filters and lasers available, rather simple layout
Free Image Processing Software
- ImageJ
advanced open-source tool for image processing and analysis, lots of additional plugins available (cross platform)
McMaster Biophotonics Facility
useful MBF ImageJ plug-in Bundle (continuation of WCIF bundle); also available: ImageJ Manual
LOCI Bio-Formats Library
plug-in for ImageJ, imports popular microscopy file formats, including those from confocal systems
LSM Toolbox
plug-in for ImageJ especially for *.lsm files
- Improvision Volocity LE
easy-to-use image viewer for various microscopy file formats, including confocal ones
(Windows, Mac OS-X)
- BioImageXD
open-source image analysis software
(Beta, cross platform)
- Zeiss ZEN LE
new free Zeiss software for viewing and processing *.lsm images
(Windows XP 32bit only)
- Zeiss LSM Image Browser
traditional free Zeiss software, can open database (*.mdb) and images (*.lsm) including all comments and acquisition information
(Windows only)
- Leica LAS AF Lite
free Leica software, can open *.lif and *.lei files, acquisition information are accessible
(Windows XP 32bit only)
- Olympus FV Viewer
free Olympus software, can open *.oib and *.oif files from Fluoview Confocals
(Windows XP 32bit only)
- Zeiss Axiovision LE
free version of the Axiovision software, able to open *.lsm files as well, nice batch export
(Windows only)
- IrfanView
image viewer for common file formats like *.tif and *.jpg, provides simple processing and batch conversion, slide show etc.<br(Windows only)
Mailing Listserver
- Confocal List Server
Confocal Microscopy List, many subscribers and discussions, archive function
- ImageJ Mailing List
lots of discussions – good if you are interested in using ImageJ more advanced