BasicsCoursePhDprog-PeterEvennetMay2011

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(DAY ONE (16th May): editing schedule)
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|-
 
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| 9:00||09:30||align="center"|FINAL PREP||align="center" | Test everything works ||align="center" |LMF TEAM
 
| 9:00||09:30||align="center"|FINAL PREP||align="center" | Test everything works ||align="center" |LMF TEAM
 
|-| ||||||||
 
  
 
|-
 
|-
| 9:30||11:05||align="center"|INTRODUCTION||align="center" | COURSE INTRO <br> WHO is WHO? Round table||align="center" |LMF TEAM
 
 
 
|-
 
|-
| ||||||||
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| 9:30||10:30||align="center"|INTRODUCTION||align="center" | COURSE INTRO <br> WHO is WHO? Round table||align="center" |LMF TEAM
 
+
 
|-
 
|-
| style="background:DarkKhaki;"|'''11:05'''
+
|-
| style="background:DarkKhaki;"|'''11:20'''
+
| 10:30||11:00||align="center"|Session 1||align="center" | Historical aspects of light microscopy||align="center" |Peter Evennett
 +
|-
 +
|-
 +
| style="background:DarkKhaki;"|'''11:00'''
 +
| style="background:DarkKhaki;"|'''11:15'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
| ||||||||
 
|-
 
| 11:20||12:30||align="center"|SESSION 1 <br>Theory|| align="center" |PRINCIPLES OF LIGHT MICROSCOPY<br> Historical aspects of microscopy<br>Introduction to lenses (Lens demo fun)<br>Lens aberrations (see colour fringes of lighting image with simple lens)<br>Magnification<br> Numerical aperture <br>Microscope illumination<br>Conjugate planes<br>Koehler illumination (Microscope Alignment Practice 1)||align="center" |PETER EVENNETT <br>LMF TEAM
 
 
|-
 
|-
| ||||||||
+
| 11:15||12:30||align="center"|SESSION 1 <br>Theory|| align="center" |PRINCIPLES OF LIGHT MICROSCOPY<br> Historical aspects of microscopy<br>Introduction to lenses (Lens demo fun)<br>Lens aberrations (see colour fringes of lighting image with simple lens)<br>Magnification<br> Numerical aperture <br>Microscope illumination<br>Conjugate planes||align="center" |PETER EVENNETT <br>LMF TEAM
 
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|-
 
|-
 
|-
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|align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| 13:30||14:15||align="center"|SESSION 1<br>Practice<br> Rotation|| align="center" |Milky Glass Block demo <br> conjugate planes on bench microscope<br>NA measurements||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 13:30||14:15||align="center"|SESSION 1<br>Practice<br> Rotation|| align="center" |Milky Glass Block demo <br> Conjugate planes on bench microscope<br>NA measurements||align="center" |Dan<br>Jan<br>Silke
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
|14:15||15:30||align="center"|SESSION 2<br>Theory||align="center" |Koehler Illumination <br> Microscope alignment||align="center" |PETER EVENNETT <br>LMF TEAM
+
|14:15||15:30||align="center"|SESSION 2<br>Theory||align="center" |Koehler Illumination <br> (Microscope alignment)||align="center" |PETER EVENNETT
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
 
| style="background:DarkKhaki;"|'''15:30'''
 
| style="background:DarkKhaki;"|'''15:30'''
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|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| 15:45||18:00||align="center"|SESSION 3<br>Theory & Practice|| align="center" |PRINCIPLES OF LIGHT MICROSCOPY||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 15:45||18:00||align="center"|SESSION 2<br>Practice|| align="center" |Koehler illumination<br>(Microscope alignment)||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| ||||||||
 
 
|}
 
|}
  
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| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
|-
 
|-
| 9:00||9:30||align="center"|Recap ||align="center" |  day 1  ||align="center" |LMF TEAM
+
| 9:00||9:45||align="center"|Recap ||align="center" |  day 1  ||align="center" |LMF TEAM
 
|-
 
|-
| 9:30||10:45||align="center"|SESSION 1 <br>Theory & Practice||align="center" |  Resolution<br>Diffraction  ||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 9:45||11:00||align="center"|SESSION 1 <br>Theory & Practice||align="center" |  Resolution<br>Diffraction  ||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
 
|--
 
|--
 
|-
 
|-
| style="background:DarkKhaki;"|'''10:45'''
 
 
| style="background:DarkKhaki;"|'''11:00'''
 
| style="background:DarkKhaki;"|'''11:00'''
 +
| style="background:DarkKhaki;"|'''11:15'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''COFFEE BREAK'''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''COFFEE BREAK'''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
| 11:00||13:00||align="center"|DEMONSTRATION || align="center"|Abbe´s diffraction experiments<br>||align="center"|PETER EVENNETT <br>LMF TEAM
+
| 11:15||13:15||align="center"|DEMONSTRATION || align="center"|Abbe´s diffraction experiments<br>||align="center"|PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| style="background:DarkKhaki;"|'''13:00'''
+
| style="background:DarkKhaki;"|'''13:15'''
| style="background:DarkKhaki;"|'''14:00'''
+
| style="background:DarkKhaki;"|'''14:15'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| 14:00||16:00||align="center"|SESSION 2<br>Theory & Practice|| align="center"|Bright Field<br> Dark Field<br> Phase Contrast microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 14:15||15:15||align="center"|SESSION 2<br>Theory|| align="center"|Bright Field<br> Dark Field||align="center" |PETER EVENNETT <br>LMF TEAM
 +
|-
 +
|-
 +
| 15:15||16:15||align="center"|SESSION 2<br>Practice|| align="center"|Bright Field<br> Dark Field||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
 
|-
 
|-
| style="background:DarkKhaki;"|'''16:00'''
 
 
| style="background:DarkKhaki;"|'''16:15'''
 
| style="background:DarkKhaki;"|'''16:15'''
 +
| style="background:DarkKhaki;"|'''16:30'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''COFFEE BREAK'''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''COFFEE BREAK'''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
| 16:15||18:00||align="center"|SESSION 2<br>Theory & Practice|| align="center"|Bright Field<br> Dark Field<br> Phase Contrast microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
 
 
|-
 
|-
| ||||||||
+
| 16:30||17:15||align="center"|SESSION 2<br>Theory|| align="center"|Phase Contrast microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
 +
|-
 +
|-
 +
| 17:15||18:15||align="center"|SESSION 2<br>Practice|| align="center"|Phase Contrast microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
 
|}
 
|}
  
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| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
|-
 
|-
| 9:00||9:30||align="center"|Recap ||align="center" |  day 2  ||align="center" |LMF TEAM
+
| 9:00||9:45||align="center"|Recap ||align="center" |  day 2  ||align="center" |LMF TEAM
 
|-
 
|-
| 9:30||11:30||align="center"|SESSION 1<br>Theory & Practice||align="center" | Objective reading<br> Objective cleaning||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 9:45||10:45||align="center"|SESSION 1<br>Theory||align="center" | Objective reading<br> Objective cleaning||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| style="background:DarkKhaki;"|'''11:30'''
+
| style="background:DarkKhaki;"|'''10:45'''
| style="background:DarkKhaki;"|'''11:45'''
+
| style="background:DarkKhaki;"|'''11:00'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| 11:45||13:00||align="center"|SESSION 2<br>Theory & Practice||align="center" | Polarized light microscopy<br>Differential Interference Contrast (DIC)||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 11:00||12:00||align="center"|SESSION 1<br>Practice<br>Group rotation||align="center" | Cover glasses and sample mounting<br>Objective reading<br> Objective cleaning||align="center" |Dan<br>Britta, Silke<br>Jan
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
 +
| 12:00||13:15||align="center"|SESSION 2<br>Theory & Practice||align="center" | Polarized light microscopy||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| style="background:DarkKhaki;"|'''13:00'''
+
|-
| style="background:DarkKhaki;"|'''14:00'''
+
| style="background:DarkKhaki;"|'''13:15'''
 +
| style="background:DarkKhaki;"|'''14:15'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| 14:00||15:15||align="center"|SESSION 3<br>Theory & Practice|| align="center"|Differential Interference Contrast (DIC)<br>Objective cleaning<br>Digital photomicrography<br>Introduction to Confocal Microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 14:15||15:30||align="center"|SESSION 3<br>Theory & Practice|| align="center"|Differential Interference Contrast (DIC)||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| ||||||||
 
 
|-
 
|-
| style="background:DarkKhaki;"|'''15:15'''
 
 
| style="background:DarkKhaki;"|'''15:30'''
 
| style="background:DarkKhaki;"|'''15:30'''
 +
| style="background:DarkKhaki;"|'''15:45'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
| ||||||||
+
| 15:45||16:15||align="center"|Question round|| align="center"|Questions to Peter Evennett||align="center" |PETER EVENNETT <br>LMF TEAM
 
|-
 
|-
| 15:30||18:00||align="center"|SESSION 4<br>Theory & Practice|| align="center"|Differential Interference Contrast (DIC)<br>Objective cleaning<br>Digital photomicrography<br>Introduction to Confocal Microscopy ||align="center" |PETER EVENNETT <br>LMF TEAM
+
| 16:15||18:15||align="center"|SESSION 4<br>Theory & Demo|| align="center"|What is a pixel<br>Analog to Digital conversion<br>Nuyquist-Shannon||align="center" |Dan
 
|-
 
|-
| ||||||||
 
 
|}
 
|}
  
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| align="center" style="background:#f0f0f0;"|'''DEMO materials'''
 
| align="center" style="background:#f0f0f0;"|'''DEMO materials'''
 
|-
 
|-
| 9:00||9:30||align="center"|Recap ||align="center" |  day 3  ||align="center" |LMF TEAM ||||
+
| 9:00||9:45||align="center"|Recap ||align="center" |  day 3  ||align="center" |LMF TEAM ||||
 
|-
 
|-
| 9:30||10:20||align="center"|SESSION 1<br>Theory||align="center" | Question session <br> Fundamentals concepts of fluorescence ||align="center" |LMF TEAM<br>Dan||align="center" |- ||align="center" |-  
+
| 9:45||10:30||align="center"|SESSION 1<br>Theory||align="center" | Fundamental concepts of fluorescence ||align="center" |LMF TEAM<br>Dan||align="center" |- ||align="center" |-  
 
|-
 
|-
| ||||||||||||
 
 
|-
 
|-
| style="background:DarkKhaki;"|'''10:20'''
+
| style="background:DarkKhaki;"|'''10:30'''
| style="background:DarkKhaki;"|'''10:55'''
+
| style="background:DarkKhaki;"|'''10:45'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
| ||||||||||||
 
 
|-
 
|-
| 10:55||13:15||align="center"|SESSION 2<br>Theory & Practice||align="center" | Fluorescence Microscopy||align="center" |LMF TEAM<br>Dan? Sike? Jan?||align="center" |• Mercury/Xenon/MetalHalide lamp<br>• Lamp houses <br>• Spectra <br>• Filters <br> • Filter cubes <br>• Fluorescent-labeled samples <br> • Filter spectral charts of each microscope (laminated)||align="center" | • Spare lamp houses <br> • Lamps <br> • Ocean optics equipment<br> • Different filters<br> • Four (4) different Filter-sets (cubes), with the appropriate descriptions
+
| 10:45||12:15||align="center"|SESSION 2<br>Theory & Practice||align="center" | Fluorescence Microscopy||align="center" |LMF TEAM<br>Silke||align="center" |• Light sources<br>• Lamp houses <br>• Spectra <br>• Filters <br> • Filter cubes <br> • Filter spectral charts of each microscope (laminated)||align="center" | • Spare lamp houses <br> • Lamps <br> • Ocean optics equipment <br> • Four (4) different Filter-sets (cubes), with the appropriate descriptions <br> • diagramms for drawing filter/fluorophore spectra
 
|-
 
|-
| ||||||||||||
+
|-
 
+
| 12:15||13:15||align="center"|SESSION 2<br>Practice||align="center" | Fluorescence imaging at microscopes ||align="center" |LMF TEAM||align="center" |- ||align="center" |• Fluorescent labeled samples
 
|-
 
|-
 
|-
 
|-
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|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''||align="center" style="background:DarkKhaki;"|'''LUNCH'''
 
|-
 
|-
| ||||||||||||
 
 
|-
 
|-
 
| 14:15||15:45||align="center"|SESSION 3<br>Theory & Practice|| align="center"|Imaging with CCD and Quantitative Imaging ||align="center" |LMF TEAM<br> Britta/Dan||align="center" | • CCD<br> • Cameras || align="center" |• CCD chip <br> • RGB Slider Spot Camera setup
 
| 14:15||15:45||align="center"|SESSION 3<br>Theory & Practice|| align="center"|Imaging with CCD and Quantitative Imaging ||align="center" |LMF TEAM<br> Britta/Dan||align="center" | • CCD<br> • Cameras || align="center" |• CCD chip <br> • RGB Slider Spot Camera setup
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|align="center" style="background:DarkKhaki;"|'''BREAK'''|| style="background:DarkKhaki;"|'''    '''|| style="background:DarkKhaki;"|'''    '''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| style="background:DarkKhaki;"|'''    '''|| style="background:DarkKhaki;"|'''    '''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
| 16:00||18:00||align="center"|SESSION 4<br>Practice|| align="center"|Imaging with CCD cameras using LMF systems ||align="center" |LMF TEAM<br>Jan / Peter / Dan / Britta / Silke (*)||align="center"|• Displaying <br>• Pixel size<br>• Look up table<br>• Binning<br>• Exposure time<br>• Saturation<br>• Signal to noise <br>• ROI<br>• Bit depth<br>• Auto map<br>• Auto contrast || align="center"|• Microscopes (DVcore, Inverted CCD, Upright CCD, polychrome, Teaching FM <br>• Fluorescence Sample slides (Kidney / Cells
+
| 16:00||18:00||align="center"|SESSION 4<br>Practice|| align="center"|Imaging with CCD cameras using LMF systems ||align="center" |LMF TEAM ||align="center"|• Displaying <br>• Pixel size<br>• Look up table<br>• Binning<br>• Exposure time<br>• Saturation<br>• Signal to noise <br>• ROI<br>• Bit depth<br>• Auto map<br>• Auto contrast || align="center"|• Microscopes: <br> DVcore(Dan, 3 students)<br> pDV (Silke, 2 students)<br> Inverted CCD (Pete, 2 students)<br> N-Storm (Britta, 2 students) <br>self-built-syst (Jan, 3 students)) <br>• Fluorescence Sample slides (Kidney / Cells)
 +
|-
 +
|-
 +
| style="background:SkyBlue;"|'''19:00'''
 +
| style="background:SkyBlue;"|'''open end'''
 +
|align="center" style="background:SkyBlue;"|'''Dinner'''
 +
|align="center" style="background:SkyBlue;"|'''with Peter'''|| align="center" style="background:SkyBlue;"|'''LMF TEAM'''|| style="background:SkyBlue;"|'''    '''|| style="background:SkyBlue;"|'''    '''
 
|}
 
|}
 
''
 
''
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| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
| align="center" style="background:#f0f0f0;"|'''Responsible person(s)'''
 
|-
 
|-
| 9:00||9:30||align="center"|Recap ||align="center" |  day 4  ||align="center" |LMF TEAM
+
| 9:00||9:45||align="center"|Recap ||align="center" |  day 4  ||align="center" |LMF TEAM
 
|-
 
|-
| 9:30||10:20||align="center"|SESSION 1<br>Theory & Demo||align="center" | Optical sectioning methods<br>Pros&Cons ||align="center" |LMF TEAM <br> Dan / Jan
+
| 9:45||10:45||align="center"|SESSION 1<br>Theory & Demo||align="center" | Optical sectioning methods<br>Pros&Cons ||align="center" |LMF TEAM <br> Dan / Jan
 
|-
 
|-
 
|-
 
|-
| style="background:DarkKhaki;"|'''10:20'''
+
| style="background:DarkKhaki;"|'''10:45'''
| style="background:DarkKhaki;"|'''10:35'''
+
| style="background:DarkKhaki;"|'''11:00'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''||align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
 
|-
 
|-
| 10:35||13:00||align="center"|SESSION 1<br>Theory & Demo||align="center" | Optical sectioning methods<br>Pros&Cons ||align="center" |LMF TEAM <br> Dan / Jan
+
| 11:00||13:15||align="center"|SESSION 1<br>Theory & Demo||align="center" | Optical sectioning methods<br>Pros&Cons ||align="center" |LMF TEAM <br> Dan / Jan
 
|-
 
|-
 
|-
 
|-
| style="background:DarkKhaki;"|'''13:00'''
+
| style="background:DarkKhaki;"|'''13:15'''
| style="background:DarkKhaki;"|'''14:00'''
+
| style="background:DarkKhaki;"|'''14:15'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|align="center" style="background:DarkKhaki;"|'''LUNCH'''|| style="background:DarkKhaki;"|'''    '''
 
|-
 
|-
 
|-
 
|-
| 14:00||15:15||align="center"|SESSION 2<br>Small Groups Discussion|| align="center"|What techniques might be good for me<br> (Own Projects) ||align="center" |LMF TEAM<br>Dan/Jan/Silke/Britta/Pete?
+
| 14:15||15:00||align="center"|SESSION 2<br>Small Groups Discussion|| align="center"|What techniques might be good for me<br> (Own Projects) ||align="center" |LMF TEAM<br>Dan/Jan/Silke/Britta/Pete?
 
|-
 
|-
 +
|-
 +
| style="background:DarkKhaki;"|'''15:00'''
 
| style="background:DarkKhaki;"|'''15:15'''
 
| style="background:DarkKhaki;"|'''15:15'''
| style="background:DarkKhaki;"|'''15:30'''
 
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|align="center" style="background:DarkKhaki;"|'''BREAK'''|| align="center" style="background:DarkKhaki;"|'''BREAK'''
 
|-
 
|-
 
|-
 
|-
| 15:30||16:30||align="center"|SESSION 3|| align="center"|Course evaluation ||align="center" |LMF TEAM
+
| 15:15||16:00||align="center"|SESSION 3|| align="center"|Course evaluation ||align="center" |LMF TEAM
 
|}
 
|}
  
 
=== OFFICE DUTIES===
 
=== OFFICE DUTIES===
 
==== - LMF Members available for users (16th May to 20th May) - ====
 
==== - LMF Members available for users (16th May to 20th May) - ====
'''FIX ME!!!'''
+
'''No office duty this time due to lack of staff. One member of the LMF will always carry the helpline phone, though.'''
  
 
{| border="4"  cellpadding="2" cellspacing="8" {| {{table}}
 
{| border="4"  cellpadding="2" cellspacing="8" {| {{table}}
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Latest revision as of 18:45, 29 April 2011

Contents

[edit] PhD Program: Basics of Light Microscopy - Peter Evennett / LMF - Course May 2011

[edit] Setup -Fri 13 May

Setup - all lmf staff move stuff to galleria Equipment needed

  • Microscopes
  • Optical bench
  • Spinning disk gadget
  • Polarazing sheets
  • Diffraction Grids
  • Fluorescent samples
  • Fluorescent Beads (Prepare slides)
  • First day Handout for students
  • Light torches


[edit] DAY ONE (16th May)

FROM TO ACTIVITY TOPICS Responsible person(s)
9:00 09:30 FINAL PREP Test everything works LMF TEAM
9:30 10:30 INTRODUCTION COURSE INTRO
WHO is WHO? Round table
LMF TEAM
10:30 11:00 Session 1 Historical aspects of light microscopy Peter Evennett
11:00 11:15 BREAK BREAK BREAK
11:15 12:30 SESSION 1
Theory
PRINCIPLES OF LIGHT MICROSCOPY
Historical aspects of microscopy
Introduction to lenses (Lens demo fun)
Lens aberrations (see colour fringes of lighting image with simple lens)
Magnification
Numerical aperture
Microscope illumination
Conjugate planes
PETER EVENNETT
LMF TEAM
12:30 13:30 LUNCH LUNCH LUNCH
13:30 14:15 SESSION 1
Practice
Rotation
Milky Glass Block demo
Conjugate planes on bench microscope
NA measurements
Dan
Jan
Silke
14:15 15:30 SESSION 2
Theory
Koehler Illumination
(Microscope alignment)
PETER EVENNETT
15:30 15:45 BREAK BREAK BREAK
15:45 18:00 SESSION 2
Practice
Koehler illumination
(Microscope alignment)
PETER EVENNETT
LMF TEAM

[edit] DAY TWO (May 17th)

FROM TO ACTIVITY TOPICS Responsible person(s)
9:00 9:45 Recap day 1 LMF TEAM
9:45 11:00 SESSION 1
Theory & Practice
Resolution
Diffraction
PETER EVENNETT
LMF TEAM
11:00 11:15 BREAK COFFEE BREAK
11:15 13:15 DEMONSTRATION Abbe´s diffraction experiments
PETER EVENNETT
LMF TEAM
13:15 14:15 BREAK LUNCH
14:15 15:15 SESSION 2
Theory
Bright Field
Dark Field
PETER EVENNETT
LMF TEAM
15:15 16:15 SESSION 2
Practice
Bright Field
Dark Field
PETER EVENNETT
LMF TEAM
16:15 16:30 BREAK COFFEE BREAK
16:30 17:15 SESSION 2
Theory
Phase Contrast microscopy PETER EVENNETT
LMF TEAM
17:15 18:15 SESSION 2
Practice
Phase Contrast microscopy PETER EVENNETT
LMF TEAM

[edit] DAY THREE (May 18th)

FROM TO ACTIVITY TOPICS Responsible person(s)
9:00 9:45 Recap day 2 LMF TEAM
9:45 10:45 SESSION 1
Theory
Objective reading
Objective cleaning
PETER EVENNETT
LMF TEAM
10:45 11:00 BREAK BREAK BREAK
11:00 12:00 SESSION 1
Practice
Group rotation
Cover glasses and sample mounting
Objective reading
Objective cleaning
Dan
Britta, Silke
Jan
12:00 13:15 SESSION 2
Theory & Practice
Polarized light microscopy PETER EVENNETT
LMF TEAM
13:15 14:15 BREAK LUNCH
14:15 15:30 SESSION 3
Theory & Practice
Differential Interference Contrast (DIC) PETER EVENNETT
LMF TEAM
15:30 15:45 BREAK BREAK BREAK
15:45 16:15 Question round Questions to Peter Evennett PETER EVENNETT
LMF TEAM
16:15 18:15 SESSION 4
Theory & Demo
What is a pixel
Analog to Digital conversion
Nuyquist-Shannon
Dan

[edit] DAY FOUR (May 19th)

FROM TO ACTIVITY TOPICS Responsible person(s) DEMO Activities DEMO materials
9:00 9:45 Recap day 3 LMF TEAM
9:45 10:30 SESSION 1
Theory
Fundamental concepts of fluorescence LMF TEAM
Dan
- -
10:30 10:45 BREAK BREAK BREAK BREAK BREAK
10:45 12:15 SESSION 2
Theory & Practice
Fluorescence Microscopy LMF TEAM
Silke
• Light sources
• Lamp houses
• Spectra
• Filters
• Filter cubes
• Filter spectral charts of each microscope (laminated)
• Spare lamp houses
• Lamps
• Ocean optics equipment
• Four (4) different Filter-sets (cubes), with the appropriate descriptions
• diagramms for drawing filter/fluorophore spectra
12:15 13:15 SESSION 2
Practice
Fluorescence imaging at microscopes LMF TEAM - • Fluorescent labeled samples
13:15 14:15 BREAK LUNCH LUNCH LUNCH LUNCH
14:15 15:45 SESSION 3
Theory & Practice
Imaging with CCD and Quantitative Imaging LMF TEAM
Britta/Dan
• CCD
• Cameras
• CCD chip
• RGB Slider Spot Camera setup
15:45 16:00 BREAK BREAK
16:00 18:00 SESSION 4
Practice
Imaging with CCD cameras using LMF systems LMF TEAM • Displaying
• Pixel size
• Look up table
• Binning
• Exposure time
• Saturation
• Signal to noise
• ROI
• Bit depth
• Auto map
• Auto contrast
• Microscopes:
DVcore(Dan, 3 students)
pDV (Silke, 2 students)
Inverted CCD (Pete, 2 students)
N-Storm (Britta, 2 students)
self-built-syst (Jan, 3 students))
• Fluorescence Sample slides (Kidney / Cells)
19:00 open end Dinner with Peter LMF TEAM

[edit] DAY FIVE (May 20th)

FROM TO ACTIVITY TOPICS Responsible person(s)
9:00 9:45 Recap day 4 LMF TEAM
9:45 10:45 SESSION 1
Theory & Demo
Optical sectioning methods
Pros&Cons
LMF TEAM
Dan / Jan
10:45 11:00 BREAK BREAK BREAK
11:00 13:15 SESSION 1
Theory & Demo
Optical sectioning methods
Pros&Cons
LMF TEAM
Dan / Jan
13:15 14:15 BREAK LUNCH
14:15 15:00 SESSION 2
Small Groups Discussion
What techniques might be good for me
(Own Projects)
LMF TEAM
Dan/Jan/Silke/Britta/Pete?
15:00 15:15 BREAK BREAK BREAK
15:15 16:00 SESSION 3 Course evaluation LMF TEAM

[edit] OFFICE DUTIES

[edit] - LMF Members available for users (16th May to 20th May) -

No office duty this time due to lack of staff. One member of the LMF will always carry the helpline phone, though.

FROM TO MONDAY TUESDAY WEDNESDAY THURSDAY FRIDAY
9:30 12:30 - --- --- --- ---
12:30 13:30 L U N C H
13:30 18:00 --- --- --- --- -
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