Publications Image Processing

Publications in 2014

	Title
Weber-2014b	Automated stitching of microtubule centerlines across serial electron tomograms.
Redemann-2014	The segmentation of microtubules in electron tomograms using Amira.

	Title
Stöter-2013	Cell Profiler and KNIME: Open Source Tools for High Content Screening

	Title
Pietzsch-2012	ImgLib2–Generic Image Processing in Java
Cardona-2012	TrakEM2 Software for Neural Circuit Reconstruction
Schindelin-2012	Fiji: an open-source platform for biological-image analysis
Kankaanpää-2012	BioImageXD: an open, general-purpose and high-throughput image-processing platform
Eliceiri-2012	Biological imaging software tools

	Title
Uddin-2011	Restoration of Uneven Illumination in Light Sheet Microscopy Images
Torsney-Weir-2011	Tuner: principled parameter finding for image segmentation algorithms using visual response surface exploration

	Title
Saalfeld-2010	As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets
Walter-2010	Visualization of image data from cells to organisms
Collinet-2010	Systems survey of endocytosis by multiparametric image analysis
Jaensch-2010	Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos
Preibisch-2010	Software for bead-based registration of selective plane illumination microscopy data
Müller-Reichert-2010c	Three-dimensional reconstruction methods for Caenorhabditis elegans ultrastructure
Cardona-2010	An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy

	Title
Niederlein-2009	Image Analysis in High-Content Screening
Preibisch-2009	Globally Optimal Stitching of Tiled 3D Microscopic Image Acquisitions
Saalfeld-2009	CATMAID: collaborative annotation toolkit for massive amounts of image data