Biopolis Dresden Imaging Platform

Image Processing & Analysis


Mitchel, JA, Martin, IS, Hoffman-Kim, D
Neurient: An algorithm for automatic tracing of confluent neuronal images to determine alignment
J Neurosci Methods. 2013 Apr 15;214(2):210-22

Meijering, E, Dzyubachyk, O, Smal, I
Methods for Cell and Particle Tracking
Methods Enzymol. 2012;504:183-200

Dima AA, Elliott JT, Filliben JJ, Halter M, Peskin A, Bernal J, Kociolek M, Brady MC, Tang HC, Plant AL
Comparison of segmentation algorithms for fluorescence microscopy images of cells

Cytometry A. 2011 Jul;79(7):545-59

Padmanabhan K, Eddy WF, Crowley JC
A novel algorithm for optimal image thresholding of biological data
J Neurosci Methods. 2010 Nov 30;193(2):380-4


Dunn KW, Kamocka MM, McDonald JH
A practical guide to evaluating colocalization in biological microscopy

Am J Physiol Cell Physiol. 2011 Apr;300(4):C723-42

Bolte S, Cordelières FP
A guided tour into subcellular colocalization analysis in light microscopy

J Microsc. 2006 Dec;224(Pt 3):213-32
(Good paper to start with if you want to learn more about colocalization. Covers all relevant points.)

Costes SV, Daelemans D, Cho EH, Dobbin Z, Pavlakis G, Lockett S
Automatic and Quantitative Measurement of Protein-Protein Colocalization in Live Cells
Biophys J. 2004 Jun;86(6):3993-4003

Manders, EMM, Verbeek FJ, Aten, JA
Measurement of co-localization of objects in dual-color confocal images
J Microscopy. 1993 March;169(Pt 3):375-382

Manders EMM, Stap J, Brakenhoff GJ, van Driel R, Aten JA
Dynamics of three-dimensional replication patterns during the S-phase, analyzed by double labelling of DNA and confocal microscopy
J Cell Sci. 1992 Nov;103(3):857-862