Scientific Computing Facility (SCF): Bio-Image Analysis
Max Planck Institute of Molecular Genetics and Cell Biology
The Scientific Computing Facility supports in four areas related to the analysis, organisation and reporting of research data generated by the scientific groups of the MPI-CBG:
- Bioinformatics data analysis
- Bio-image analysis
- Scientific software development
- Research data management & electronic lab notebook support
As part of this, the Bio-Image Analysis team supports with the extraction of quantitative information from biological structures by providing state-of-the art image analysis solutions. We utilise both traditional and machine learning approaches to analyse image data of different types (2D,3D + time) and sources (light microscopy, electron microscopy).
© MPI-CBG
Services
- Consultation
- Advise on appropriate analyses and tools
- Custom Pipeline Development
- Python, Matlab, Fiji, SLURM
- Software Support
- Fiji, Imaris, Arivis, Huygens and more!
Techniques
- Data Handling: Pre- and Post-processing of image data
- Image Segmentation
- Object Detection/Classification
- Single-Particle and Cell Tracking
Quantification: Colocalization, Morphological Analysis, Clustering
Team
© MPI-CBG
Anthony Vega
Bio-Image Analyst
© MPI-CBG
Ivey Sebastian
Bio-Image Analyst
Contact
Visitor's Address
Max Planck Institute of Molecular
Cell Biology and Genetics
- Scientific Computing Facility -
Pfotenhauerstr. 108
01307 Dresden
Germany
Postal Address
Max Planck Institute of Molecular
Cell Biology and Genetics
- Scientific Computing Facility -
Pfotenhauerstr. 108
01307 Dresden
Germany