Test-Teaching
From BioDIP
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== Image Formation == | == Image Formation == | ||
* [[media:Evennett_oct2008_03_diffraction.pdf|Diffraction ]] | * [[media:Evennett_oct2008_03_diffraction.pdf|Diffraction ]] | ||
| + | * [[Peter_Evennett_-_Abbe_Diffraction_Experiments|video by Peter Evennett: Abbe's diffraction experiments]] | ||
== Contrast techniques for transmitted light microscopy== | == Contrast techniques for transmitted light microscopy== | ||
* [[media:Contrasting_techniques.pdf|Diffraction, Resolution and Contrasting Techniques (2008)]] | * [[media:Contrasting_techniques.pdf|Diffraction, Resolution and Contrasting Techniques (2008)]] | ||
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* [[media:Evennett_oct2008_05_polarised-light.pdf|Polarised Light]] | * [[media:Evennett_oct2008_05_polarised-light.pdf|Polarised Light]] | ||
== Fluorescence microscopy == | == Fluorescence microscopy == | ||
| + | * [[media:Fluorescence_notes.pdf|Fluorescence Microscopy]] | ||
| + | * [[media:Fluorescence_basics.pdf| Basics of fluorescence Microscopy]] | ||
| + | * [[media:Fluorescence_Imaging.pdf|Fluorescence Imaging (2008)]] | ||
= Image Processing = | = Image Processing = | ||
| − | = Courses = | + | * [[media:QuantitativeImagingPhDCourseFriday-10-2009.pdf| Quantitative Imaging and Image Processing/Analysis 10-2009 (IPF)]] |
| − | == | + | * [[media:Quant_imag_and_image_processing1108.pdf|Quantitative Imaging and Basic Image Processing (2008)]] |
| + | |||
| + | == IPF Image Processing Courses == | ||
| + | * [[media:2011-10-Basics_of_Imaging_Processing_Course.pdf|What you need to know about Image Analysis - updated Oct 2011]] | ||
| + | * [[media:QuantitativeColocAnalysis-10-2011.pdf|Quantitative Imaging for Colocalization Analysis (updated Oct 2011)]] | ||
| + | * [[media:Intro-fiji-and-macros.pdf|Introduction to Fiji and Macro Programming (updated Jul 2011)]] | ||
| + | * [http://fiji.sc/Category:Tutorials Fiji (is just ImageJ - batteries included) Tutorials] | ||
| + | |||
| + | ==General Image Processing reading material== | ||
| + | *[http://swehsc.pharmacy.arizona.edu/exppath/micro/digimage_ethics.php Image manipulation ethics - Tutorial - avoid twisted pixels], and the [http://www.springerlink.com/content/00311qw26613m261/fulltext.pdf original article] | ||
| + | |||
| + | ==DIPP course from the TDS of the MPI-CBG== | ||
| + | * [[media:Presentations_TDD_DIPP2011.zip|Presentations about multifactorial experimental design, automated microscopy and image analysis - updated Oct 2011]] | ||
| + | |||
| + | * [[media:Presentations_DIPP-course-TDS_2012_03.zip|Presentations about multifactorial experimental design, automated microscopy and image analysis - updated Mar 2012]] | ||
| + | |||
| + | == Matlab == | ||
| + | * [[media:Matlab-Fundamentals.pdf|Matlab Fundamentals - December 2010]] | ||
| + | |||
| + | See also the handouts of the [http://www.lmc.ethz.ch/Teaching/matlab_course Matlab for biologists] course at the Light Microscopy Centre of the ETH Zürich and the [http://www.neural-circuits.org/teaching/programming-with-matlab materials] of the Matlab programming course for Biophysicists at Universidad Autónoma de Madrid. | ||
| + | |||
| + | |||
= Advanced Microscopy = | = Advanced Microscopy = | ||
| + | * [[media:FRET.pdf|FRET by Mike Lorenz (2009)]] | ||
| + | * [[media:FLIM.pdf|FLIM by Mike Lorenz (2009)]] | ||
| + | * [[media:How_to_do_FRET.pdf|How to do FRET by Mike Lorenz (2009)]] | ||
| + | * [[media:FLIM-FRET_data_examples.pdf|FLIM-FRET data examples by Mike Lorenz (2009)]] | ||
| + | * [[media:Confocal_notes.pdf|Confocal Microscopy]] | ||
| + | * [[media:Optical_Sectioning_ProsAndCons10-2009.pdf|Optical Sectioning Methods - pros and cons (LMF)]] | ||
| + | * [[media:DeconvolutionAndOpticalSectioning-prosandcons-11-2010.pdf|Deconvolution and Optical Sectioning - pros and cons-11-2010]] | ||
| + | |||
| + | |||
| + | = Courses = | ||
| + | == Peter Evennett Course == | ||
Twice a year the BioDIP team together with Peter Evennett organizes a basic course about microscopy. | Twice a year the BioDIP team together with Peter Evennett organizes a basic course about microscopy. | ||
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=== BioDIP Microscopy Course === | === BioDIP Microscopy Course === | ||
| − | + | ||
* [[media:CCD_intro_2008_oct.pdf|CCD Imaging (2008)]] | * [[media:CCD_intro_2008_oct.pdf|CCD Imaging (2008)]] | ||
* [[media:Digital_imaging_oct_2008.pdf|Digital Imaging (2008)]] | * [[media:Digital_imaging_oct_2008.pdf|Digital Imaging (2008)]] | ||
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* [[Papers#Light_Microscopy|Papers]] | * [[Papers#Light_Microscopy|Papers]] | ||
* [[Links#Microscopy_-_Infos_and_Introductions|Links]] | * [[Links#Microscopy_-_Infos_and_Introductions|Links]] | ||
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Revision as of 12:46, 14 January 2014
delete gallery page and integrate it here
Contents |
Light Microscopy
Principles of light microscopy
Koehler illumination
Image Formation
Contrast techniques for transmitted light microscopy
Dark field microscopy
Phase contrast microscopy
Differential Interference Contrast (DIC) microscopy
Polarized light microscopy
Fluorescence microscopy
Image Processing
- Quantitative Imaging and Image Processing/Analysis 10-2009 (IPF)
- Quantitative Imaging and Basic Image Processing (2008)
IPF Image Processing Courses
- What you need to know about Image Analysis - updated Oct 2011
- Quantitative Imaging for Colocalization Analysis (updated Oct 2011)
- Introduction to Fiji and Macro Programming (updated Jul 2011)
- Fiji (is just ImageJ - batteries included) Tutorials
General Image Processing reading material
DIPP course from the TDS of the MPI-CBG
Matlab
See also the handouts of the Matlab for biologists course at the Light Microscopy Centre of the ETH Zürich and the materials of the Matlab programming course for Biophysicists at Universidad Autónoma de Madrid.
Advanced Microscopy
- FRET by Mike Lorenz (2009)
- FLIM by Mike Lorenz (2009)
- How to do FRET by Mike Lorenz (2009)
- FLIM-FRET data examples by Mike Lorenz (2009)
- Confocal Microscopy
- Optical Sectioning Methods - pros and cons (LMF)
- Deconvolution and Optical Sectioning - pros and cons-11-2010
Courses
Peter Evennett Course
Twice a year the BioDIP team together with Peter Evennett organizes a basic course about microscopy.
Schedules/Content
Impression from the Peter Evennett course 2007
course announcement
Peter Evennett and Humberto at the optical bench
room overview - 2nd floor galeria
Peter at his demo microscope
it's all about lenses
Jan
the optical bench
Peter at the condenser
demonstration of refractive index with a cup, a coin and water
Peter Evennett
Peter & Peter, setting up the demo microscope
Tim Cross, finally at the pipette
Master Course
Cool Videos we made for teaching and information
Videos at Vimeo (in HD) These show Abbe's diffraction experiments (Peter Evennett), cool SPIM 3D reconstructions, and the effects of the confocal pinhole etc.
BioDIP Microscopy Course
Companies' Resources
- Zeiss Campus - Education in Microscopy and Digital Imaging - with flash tutorials
- Olympus Microscopy Resources
- Nikon's interactive Java tutorials and demonstrations for many light microscopy techniques
- Optical Filters - Essential Tools by Dr. Michael Sommerauer (AHF)
- Optical Filters - Specifying Filters by Dr. Michael Sommerauer (AHF)
