Teaching Material
From BioDIP
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* [[media:Intro-fiji-and-macros.pdf|Introduction to Fiji and Macro Programming (updated Jul 2011)]] | * [[media:Intro-fiji-and-macros.pdf|Introduction to Fiji and Macro Programming (updated Jul 2011)]] | ||
* [http://fiji.sc/Category:Tutorials Fiji (is just ImageJ - batteries included) Tutorials] | * [http://fiji.sc/Category:Tutorials Fiji (is just ImageJ - batteries included) Tutorials] | ||
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| + | ===General Image Processing reading material=== | ||
| + | *[http://swehsc.pharmacy.arizona.edu/exppath/micro/digimage_ethics.php Image manipulation ethics - avoid twisted pixels] | ||
== Other courses == | == Other courses == | ||
Revision as of 09:48, 4 October 2011
Contents |
Cool Videos we made for teaching and information
Videos at Vimeo (in HD) These show Abbe's diffraction experiments (Peter Evennett), cool SPIM 3D reconstructions, and the effects of the confocal pinhole etc.
Light Microscopy
IFN Microscopy Course
- Basics of Microscopy (2008)
- Köhler Illumination (2008)
- Diffraction, Resolution and Contrasting Techniques (2008)
- Fluorescence Imaging (2008)
- CCD Imaging (2008)
- Digital Imaging (2008)
- Quantitative Imaging and Basic Image Processing (2008)
- FRET by Mike Lorenz (2009)
- FLIM by Mike Lorenz (2009)
- How to do FRET by Mike Lorenz (2009)
- FLIM-FRET data examples by Mike Lorenz (2009)
add-on
Peter Evennett Microscopy Course
- Principles of Light Microscopy
- Lens Aberrations
- Diffraction
- Contrast
- Polarised Light
- Interference Contrast
- Stereomicroscopes
- Fluorescence Microscopy
- Basics of fluorescence Microscopy
- Confocal Microscopy
- Optical Sectioning Methods - pros and cons (LMF)
- Deconvolution and Optical Sectioning - pros and cons-11-2010
- Quantitative Imaging and Image Processing/Analysis 10-2009 (IPF)
add-on
Companies' Resources
- [http://zeiss-campus.magnet.fsu.edu/index.html Zeiss Campus - Education in Microscopy and Digital Imaging - with flash tutorials
- Zeiss: Microscopy from the very Beginning
- Olympus: Basics of Light Microscopy
- Optical Filters - Essential Tools by Dr. Michael Sommerauer (AHF)
- Optical Filters - Specifying Filters by Dr. Michael Sommerauer (AHF)
- Nikon's interactive Java tutorials and demonstrations for many light microscopy techniques
Other Resources
Related Sections
Image Processing
IPF Image Processing Courses
- What you need to know about Image Analysis - updated Dec 2010
- Quantitative Imaging for Colocalization Analysis (updated Dec 2010)
- Introduction to Fiji and Macro Programming (updated Jul 2011)
- Fiji (is just ImageJ - batteries included) Tutorials
General Image Processing reading material
Other courses
Matlab
See also the handouts of the Matlab for biologists course at the Light Microscopy Centre of the ETH Zürich and the materials of the Matlab programming course for Biophysicists at Universidad Autónoma de Madrid.
